J3_1FKA_010

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

1FKA|1|A|G|1065, 1FKA|1|A|U|1066, 1FKA|1|A|C|1081, 1FKA|1|A|A|1082

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1FKA|1|A|U|1054
1FKA|1|A|G|1055
*
1FKA|1|A|U|1064
1FKA|1|A|G|1065
1FKA|1|A|U|1066
1FKA|1|A|U|1067
1FKA|1|A|G|1068
*
1FKA|1|A|C|1079
1FKA|1|A|G|1080
1FKA|1|A|C|1081
1FKA|1|A|A|1082
1FKA|1|A|A|1083

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain E

30S RIBOSOMAL PROTEIN S5