J3_1I96_004
3D structure
- PDB id
- 1I96 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.2 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 1I96|1|A|A|952, 1I96|1|A|G|953, 1I96|1|A|A|955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1I96_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1477
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1I96|1|A|U|932
1I96|1|A|U|933
1I96|1|A|U|934
1I96|1|A|A|935
1I96|1|A|A|936
1I96|1|A|U|937
1I96|1|A|U|938
1I96|1|A|C|939
*
1I96|1|A|G|950
1I96|1|A|A|951
1I96|1|A|A|952
1I96|1|A|G|953
1I96|1|A|A|954
1I96|1|A|A|955
1I96|1|A|C|956
1I96|1|A|C|957
1I96|1|A|U|958
1I96|1|A|U|959
1I96|1|A|A|960
1I96|1|A|C|961
*
1I96|1|A|G|1202
1I96|1|A|G|1203
1I96|1|A|C|1204
1I96|1|A|G|1205
1I96|1|A|A|1206
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain N
- 30S RIBOSOMAL PROTEIN S14
- Chain S
- 30S RIBOSOMAL PROTEIN S19
Coloring options: