3D structure

PDB id
1IBL (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.11 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1IBL_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.066
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

1IBL|1|A|C|936
1IBL|1|A|A|937
1IBL|1|A|A|938
1IBL|1|A|G|939
*
1IBL|1|A|C|1344
1IBL|1|A|U|1345
1IBL|1|A|A|1346
1IBL|1|A|G|1347
1IBL|1|A|U|1348
1IBL|1|A|A|1349
1IBL|1|A|A|1350
*
1IBL|1|A|U|1372
1IBL|1|A|G|1373
1IBL|1|A|A|1374
1IBL|1|A|A|1375
1IBL|1|A|U|1376
1IBL|1|A|A|1377
1IBL|1|A|C|1378
1IBL|1|A|G|1379

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
30S RIBOSOMAL PROTEIN S7
Chain I
30S RIBOSOMAL PROTEIN S9

Coloring options:


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