3D structure

PDB id
1IBL (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.11 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
1IBL|1|A|A|975, 1IBL|1|A|G|976, 1IBL|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1IBL_004 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.057
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

1IBL|1|A|U|955
1IBL|1|A|U|956
1IBL|1|A|U|957
1IBL|1|A|A|958
1IBL|1|A|A|959
1IBL|1|A|U|960
1IBL|1|A|U|961
1IBL|1|A|C|962
*
1IBL|1|A|G|973
1IBL|1|A|A|974
1IBL|1|A|A|975
1IBL|1|A|G|976
1IBL|1|A|A|977
1IBL|1|A|A|978
1IBL|1|A|C|979
1IBL|1|A|C|980
1IBL|1|A|U|981
1IBL|1|A|U|982
1IBL|1|A|A|983
1IBL|1|A|C|984
*
1IBL|1|A|G|1221
1IBL|1|A|G|1222
1IBL|1|A|C|1223
1IBL|1|A|G|1224
1IBL|1|A|A|1225

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain J
30S RIBOSOMAL PROTEIN S10
Chain M
30S RIBOSOMAL PROTEIN S13
Chain N
30S RIBOSOMAL PROTEIN S14
Chain S
30S RIBOSOMAL PROTEIN S19
Chain Y
ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA

Coloring options:


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