J3_1IBL_006

3D structure

PDB id

1IBL (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

UAGGGAACC*GGGUGCC*GGAGCCCUA

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1IBL|1|A|U|1000
1IBL|1|A|A|1001
1IBL|1|A|G|1002
1IBL|1|A|G|1003
1IBL|1|A|G|1003|||A
1IBL|1|A|A|1004
1IBL|1|A|A|1005
1IBL|1|A|C|1006
1IBL|1|A|C|1007
*
1IBL|1|A|G|1022
1IBL|1|A|G|1023
1IBL|1|A|G|1024
1IBL|1|A|U|1025
1IBL|1|A|G|1026
1IBL|1|A|C|1027
1IBL|1|A|C|1028
*
1IBL|1|A|G|1033
1IBL|1|A|G|1034
1IBL|1|A|A|1035
1IBL|1|A|G|1036
1IBL|1|A|C|1037
1IBL|1|A|C|1038
1IBL|1|A|C|1039
1IBL|1|A|U|1040
1IBL|1|A|A|1041

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains