J3_1JJ2_004

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGA*UCUAAGAAAA*UUAC

Length

17 nucleotides

Bulged bases

1JJ2|1|0|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JJ2|1|0|G|1159
1JJ2|1|0|G|1160
1JJ2|1|0|A|1161
*
1JJ2|1|0|U|1185
1JJ2|1|0|C|1186
1JJ2|1|0|U|1187
1JJ2|1|0|A|1188
1JJ2|1|0|A|1189
1JJ2|1|0|G|1190
1JJ2|1|0|A|1191
1JJ2|1|0|A|1192
1JJ2|1|0|A|1193
1JJ2|1|0|A|1194
*
1JJ2|1|0|U|1205
1JJ2|1|0|U|1206
1JJ2|1|0|A|1207
1JJ2|1|0|C|1208

Current chains

Chain 0

23S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN L10