J3_1JJ2_005

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1JJ2|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JJ2_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0259

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1JJ2|1|0|C|1404
1JJ2|1|0|U|1405
1JJ2|1|0|A|1406
1JJ2|1|0|A|1407
1JJ2|1|0|U|1408
1JJ2|1|0|G|1409
*
1JJ2|1|0|C|1700
1JJ2|1|0|A|1701
1JJ2|1|0|U|1702
1JJ2|1|0|G|1703
*
1JJ2|1|0|C|1715
1JJ2|1|0|A|1716
1JJ2|1|0|A|1717
1JJ2|1|0|G|1718

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

RIBOSOMAL PROTEIN L19E