J3_1JJ2_011
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UG*CUGCAAAG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1JJ2_011 not in the Motif Atlas
- Geometric match to J3_4V9F_011
- Geometric discrepancy: 0.0216
- The information below is about J3_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
1JJ2|1|0|U|27
1JJ2|1|0|G|28
*
1JJ2|1|0|C|480
1JJ2|1|0|U|481
1JJ2|1|0|G|482
1JJ2|1|0|C|483
1JJ2|1|0|A|484
1JJ2|1|0|A|485
1JJ2|1|0|A|486
1JJ2|1|0|G|487
*
1JJ2|1|0|C|515
1JJ2|1|0|A|516
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L39E
- Chain C
- RIBOSOMAL PROTEIN L4
- Chain Q
- RIBOSOMAL PROTEIN L22
- Chain S
- RIBOSOMAL PROTEIN L24
Coloring options: