J3_1JZX_013

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

1JZX|1|A|U|460, 1JZX|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZX_013 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.148

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

1JZX|1|A|C|32
1JZX|1|A|C|33
1JZX|1|A|U|34
1JZX|1|A|G|35
*
1JZX|1|A|C|457
1JZX|1|A|G|458
1JZX|1|A|A|459
1JZX|1|A|U|460
1JZX|1|A|A|461
1JZX|1|A|G|462
1JZX|1|A|C|463
1JZX|1|A|G|464
1JZX|1|A|C|465
1JZX|1|A|A|466
1JZX|1|A|U|467
1JZX|1|A|A|468
1JZX|1|A|G|469
1JZX|1|A|U|470
1JZX|1|A|A|471
1JZX|1|A|C|472
*
1JZX|1|A|G|479
1JZX|1|A|G|480
1JZX|1|A|A|481
1JZX|1|A|A|482
1JZX|1|A|A|483
1JZX|1|A|G|484

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4