J3_1JZX_015

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CACCUCAGAA*UGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZX_015 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1356

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

1JZX|1|A|C|308
1JZX|1|A|G|309
1JZX|1|A|A|310
1JZX|1|A|A|311
1JZX|1|A|G|312
*
1JZX|1|A|C|327
1JZX|1|A|A|328
1JZX|1|A|C|329
1JZX|1|A|C|330
1JZX|1|A|U|331
1JZX|1|A|C|332
1JZX|1|A|A|333
1JZX|1|A|G|334
1JZX|1|A|A|335
1JZX|1|A|A|336
*
1JZX|1|A|U|348
1JZX|1|A|G|349
1JZX|1|A|U|350
1JZX|1|A|A|351
1JZX|1|A|G|352

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4