J3_1JZX_016

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGC*GGCGGAG*CGAGUCCGAAUAGGGCGGCAUUAG

Length

36 nucleotides

Bulged bases

1JZX|1|A|A|648, 1JZX|1|A|U|656, 1JZX|1|A|A|665, 1JZX|1|A|U|666, 1JZX|1|A|U|667, 1JZX|1|A|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JZX|1|A|C|611
1JZX|1|A|G|612
1JZX|1|A|A|613
1JZX|1|A|G|614
1JZX|1|A|C|615
*
1JZX|1|A|G|633
1JZX|1|A|G|634
1JZX|1|A|C|635
1JZX|1|A|G|636
1JZX|1|A|G|637
1JZX|1|A|A|638
1JZX|1|A|G|639
*
1JZX|1|A|C|646
1JZX|1|A|G|647
1JZX|1|A|A|648
1JZX|1|A|G|649
1JZX|1|A|U|650
1JZX|1|A|C|651
1JZX|1|A|C|652
1JZX|1|A|G|653
1JZX|1|A|A|654
1JZX|1|A|A|655
1JZX|1|A|U|656
1JZX|1|A|A|657
1JZX|1|A|G|658
1JZX|1|A|G|659
1JZX|1|A|G|660
1JZX|1|A|C|661
1JZX|1|A|G|662
1JZX|1|A|G|663
1JZX|1|A|C|664
1JZX|1|A|A|665
1JZX|1|A|U|666
1JZX|1|A|U|667
1JZX|1|A|A|668
1JZX|1|A|G|669

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4