J3_1JZX_021

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCAA*UGUAGAG*UAGAAG

Length

18 nucleotides

Bulged bases

1JZX|1|A|U|2298, 1JZX|1|A|G|2313, 1JZX|1|A|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZX_021 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.5465

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

1JZX|1|A|C|2274
1JZX|1|A|U|2275
1JZX|1|A|C|2276
1JZX|1|A|A|2277
1JZX|1|A|A|2278
*
1JZX|1|A|U|2296
1JZX|1|A|G|2297
1JZX|1|A|U|2298
1JZX|1|A|A|2299
1JZX|1|A|G|2300
1JZX|1|A|A|2301
1JZX|1|A|G|2302
*
1JZX|1|A|U|2311
1JZX|1|A|A|2312
1JZX|1|A|G|2313
1JZX|1|A|A|2314
1JZX|1|A|A|2315
1JZX|1|A|G|2316

Current chains

Chain A

23S rRNA

Nearby chains