J3_1JZZ_006

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUG*CGGCCGUAACUAUAACGGUCCUAAGGUAG*CGAAAG

Length

38 nucleotides

Bulged bases

1JZZ|1|A|A|1895, 1JZZ|1|A|C|1897, 1JZZ|1|A|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JZZ|1|A|C|1825
1JZZ|1|A|U|1826
1JZZ|1|A|G|1827
*
1JZZ|1|A|C|1888
1JZZ|1|A|G|1889
1JZZ|1|A|G|1890
1JZZ|1|A|C|1891
1JZZ|1|A|C|1892
1JZZ|1|A|G|1893
1JZZ|1|A|U|1894
1JZZ|1|A|A|1895
1JZZ|1|A|A|1896
1JZZ|1|A|C|1897
1JZZ|1|A|U|1898
1JZZ|1|A|A|1899
1JZZ|1|A|U|1900
1JZZ|1|A|A|1901
1JZZ|1|A|A|1902
1JZZ|1|A|C|1903
1JZZ|1|A|G|1904
1JZZ|1|A|G|1905
1JZZ|1|A|U|1906
1JZZ|1|A|C|1907
1JZZ|1|A|C|1908
1JZZ|1|A|U|1909
1JZZ|1|A|A|1910
1JZZ|1|A|A|1911
1JZZ|1|A|G|1912
1JZZ|1|A|G|1913
1JZZ|1|A|U|1914
1JZZ|1|A|A|1915
1JZZ|1|A|G|1916
*
1JZZ|1|A|C|1950
1JZZ|1|A|G|1951
1JZZ|1|A|A|1952
1JZZ|1|A|A|1953
1JZZ|1|A|A|1954
1JZZ|1|A|G|1955

Current chains

Chain A

23S rRNA

Nearby chains