J3_1JZZ_015

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAAG*CACCUCAGAA*UGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZZ_015 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1366

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

1JZZ|1|A|C|308
1JZZ|1|A|G|309
1JZZ|1|A|A|310
1JZZ|1|A|A|311
1JZZ|1|A|G|312
*
1JZZ|1|A|C|327
1JZZ|1|A|A|328
1JZZ|1|A|C|329
1JZZ|1|A|C|330
1JZZ|1|A|U|331
1JZZ|1|A|C|332
1JZZ|1|A|A|333
1JZZ|1|A|G|334
1JZZ|1|A|A|335
1JZZ|1|A|A|336
*
1JZZ|1|A|U|348
1JZZ|1|A|G|349
1JZZ|1|A|U|350
1JZZ|1|A|A|351
1JZZ|1|A|G|352

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4