J3_1JZZ_020

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGGAGUGAUGGAGGGACG*CC*GAAAAGCUUCUAAACGUUGAAA

Length

42 nucleotides

Bulged bases

1JZZ|1|A|C|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JZZ|1|A|U|1426
1JZZ|1|A|G|1427
1JZZ|1|A|G|1428
1JZZ|1|A|A|1429
1JZZ|1|A|G|1430
1JZZ|1|A|U|1431
1JZZ|1|A|G|1432
1JZZ|1|A|A|1433
1JZZ|1|A|U|1434
1JZZ|1|A|G|1435
1JZZ|1|A|G|1436
1JZZ|1|A|A|1437
1JZZ|1|A|G|1438
1JZZ|1|A|G|1439
1JZZ|1|A|G|1440
1JZZ|1|A|A|1441
1JZZ|1|A|C|1442
1JZZ|1|A|G|1443
*
1JZZ|1|A|C|1580
1JZZ|1|A|C|1581
*
1JZZ|1|A|G|1584
1JZZ|1|A|A|1585
1JZZ|1|A|A|1586
1JZZ|1|A|A|1587
1JZZ|1|A|A|1588
1JZZ|1|A|G|1589
1JZZ|1|A|C|1590
1JZZ|1|A|U|1591
1JZZ|1|A|U|1592
1JZZ|1|A|C|1593
1JZZ|1|A|U|1594
1JZZ|1|A|A|1595
1JZZ|1|A|A|1596
1JZZ|1|A|A|1597
1JZZ|1|A|C|1598
1JZZ|1|A|G|1599
1JZZ|1|A|U|1600
1JZZ|1|A|U|1601
1JZZ|1|A|G|1602
1JZZ|1|A|A|1603
1JZZ|1|A|A|1604
1JZZ|1|A|A|1605

Current chains

Chain A

23S rRNA

Nearby chains