J3_1K01_003

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGA*UUCAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

1K01|1|A|A|1099, 1K01|1|A|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|G|1066
1K01|1|A|G|1067
1K01|1|A|A|1068
*
1K01|1|A|U|1092
1K01|1|A|U|1093
1K01|1|A|C|1094
1K01|1|A|A|1095
1K01|1|A|A|1096
1K01|1|A|A|1097
1K01|1|A|G|1098
1K01|1|A|A|1099
1K01|1|A|G|1100
1K01|1|A|U|1101
1K01|1|A|G|1102
*
1K01|1|A|C|1111
1K01|1|A|U|1112
1K01|1|A|C|1113
1K01|1|A|A|1114
1K01|1|A|C|1115

Current chains

Chain A

23S rRNA

Nearby chains