J3_1K01_006

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CGGCCGUAACUAUAACGGUCCUAAGGUAG*CGAAAG

Length

38 nucleotides

Bulged bases

1K01|1|A|A|1895, 1K01|1|A|C|1897, 1K01|1|A|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|C|1825
1K01|1|A|U|1826
1K01|1|A|G|1827
*
1K01|1|A|C|1888
1K01|1|A|G|1889
1K01|1|A|G|1890
1K01|1|A|C|1891
1K01|1|A|C|1892
1K01|1|A|G|1893
1K01|1|A|U|1894
1K01|1|A|A|1895
1K01|1|A|A|1896
1K01|1|A|C|1897
1K01|1|A|U|1898
1K01|1|A|A|1899
1K01|1|A|U|1900
1K01|1|A|A|1901
1K01|1|A|A|1902
1K01|1|A|C|1903
1K01|1|A|G|1904
1K01|1|A|G|1905
1K01|1|A|U|1906
1K01|1|A|C|1907
1K01|1|A|C|1908
1K01|1|A|U|1909
1K01|1|A|A|1910
1K01|1|A|A|1911
1K01|1|A|G|1912
1K01|1|A|G|1913
1K01|1|A|U|1914
1K01|1|A|A|1915
1K01|1|A|G|1916
*
1K01|1|A|C|1950
1K01|1|A|G|1951
1K01|1|A|A|1952
1K01|1|A|A|1953
1K01|1|A|A|1954
1K01|1|A|G|1955

Current chains

Chain A

23S rRNA

Nearby chains