J3_1K01_015

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CACCUCAGAA*UGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1K01_015 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1347

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

1K01|1|A|C|308
1K01|1|A|G|309
1K01|1|A|A|310
1K01|1|A|A|311
1K01|1|A|G|312
*
1K01|1|A|C|327
1K01|1|A|A|328
1K01|1|A|C|329
1K01|1|A|C|330
1K01|1|A|U|331
1K01|1|A|C|332
1K01|1|A|A|333
1K01|1|A|G|334
1K01|1|A|A|335
1K01|1|A|A|336
*
1K01|1|A|U|348
1K01|1|A|G|349
1K01|1|A|U|350
1K01|1|A|A|351
1K01|1|A|G|352

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4