J3_1K01_016
3D structure
- PDB id
- 1K01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAGC*GGCGGAG*CGAGUCCGAAUAGGGCGGCAUUAG
- Length
- 36 nucleotides
- Bulged bases
- 1K01|1|A|A|648, 1K01|1|A|U|656, 1K01|1|A|A|665, 1K01|1|A|U|666, 1K01|1|A|U|667, 1K01|1|A|A|668
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1K01|1|A|C|611
1K01|1|A|G|612
1K01|1|A|A|613
1K01|1|A|G|614
1K01|1|A|C|615
*
1K01|1|A|G|633
1K01|1|A|G|634
1K01|1|A|C|635
1K01|1|A|G|636
1K01|1|A|G|637
1K01|1|A|A|638
1K01|1|A|G|639
*
1K01|1|A|C|646
1K01|1|A|G|647
1K01|1|A|A|648
1K01|1|A|G|649
1K01|1|A|U|650
1K01|1|A|C|651
1K01|1|A|C|652
1K01|1|A|G|653
1K01|1|A|A|654
1K01|1|A|A|655
1K01|1|A|U|656
1K01|1|A|A|657
1K01|1|A|G|658
1K01|1|A|G|659
1K01|1|A|G|660
1K01|1|A|C|661
1K01|1|A|G|662
1K01|1|A|G|663
1K01|1|A|C|664
1K01|1|A|A|665
1K01|1|A|U|666
1K01|1|A|U|667
1K01|1|A|A|668
1K01|1|A|G|669
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain K
- Ribosomal Protein L4
Coloring options: