J3_1K01_017

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAGCUA*UAGGA*UAACCGAA

Length

20 nucleotides

Bulged bases

1K01|1|A|G|699, 1K01|1|A|A|802, 1K01|1|A|C|803, 1K01|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|U|696
1K01|1|A|G|697
1K01|1|A|A|698
1K01|1|A|G|699
1K01|1|A|C|700
1K01|1|A|U|701
1K01|1|A|A|702
*
1K01|1|A|U|786
1K01|1|A|A|787
1K01|1|A|G|788
1K01|1|A|G|789
1K01|1|A|A|790
*
1K01|1|A|U|800
1K01|1|A|A|801
1K01|1|A|A|802
1K01|1|A|C|803
1K01|1|A|C|804
1K01|1|A|G|805
1K01|1|A|A|806
1K01|1|A|A|807

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4

Chain L

Ribosomal Protein L22