J3_1K01_021

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUCAA*UGUAGAG*UAGAAG

Length

18 nucleotides

Bulged bases

1K01|1|A|U|2298, 1K01|1|A|G|2313, 1K01|1|A|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1K01_021 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.547

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

1K01|1|A|C|2274
1K01|1|A|U|2275
1K01|1|A|C|2276
1K01|1|A|A|2277
1K01|1|A|A|2278
*
1K01|1|A|U|2296
1K01|1|A|G|2297
1K01|1|A|U|2298
1K01|1|A|A|2299
1K01|1|A|G|2300
1K01|1|A|A|2301
1K01|1|A|G|2302
*
1K01|1|A|U|2311
1K01|1|A|A|2312
1K01|1|A|G|2313
1K01|1|A|A|2314
1K01|1|A|A|2315
1K01|1|A|G|2316

Current chains

Chain A

23S rRNA

Nearby chains