J3_1K8A_011
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UG*CUGCAAAG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1K8A_011 not in the Motif Atlas
- Geometric match to J3_4V9F_011
- Geometric discrepancy: 0.0329
- The information below is about J3_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
1K8A|1|A|U|27
1K8A|1|A|G|28
*
1K8A|1|A|C|480
1K8A|1|A|U|481
1K8A|1|A|G|482
1K8A|1|A|C|483
1K8A|1|A|A|484
1K8A|1|A|A|485
1K8A|1|A|A|486
1K8A|1|A|G|487
*
1K8A|1|A|C|515
1K8A|1|A|A|516
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain S
- RIBOSOMAL PROTEIN L22
- Chain U
- RIBOSOMAL PROTEIN L24
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