J3_1K8A_014
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 1K8A|1|A|U|68, 1K8A|1|A|A|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1K8A_014 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.033
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
1K8A|1|A|A|52
1K8A|1|A|C|53
*
1K8A|1|A|G|66
1K8A|1|A|A|67
1K8A|1|A|U|68
1K8A|1|A|A|69
1K8A|1|A|A|70
1K8A|1|A|G|71
1K8A|1|A|C|72
*
1K8A|1|A|G|105
1K8A|1|A|A|106
1K8A|1|A|U|107
1K8A|1|A|U|108
1K8A|1|A|U|109
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain T
- RIBOSOMAL PROTEIN L23
- Chain W
- RIBOSOMAL PROTEIN L29
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