J3_1K8A_017

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1K8A_017 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0393

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

1K8A|1|A|U|1531
1K8A|1|A|G|1532
1K8A|1|A|A|1533
1K8A|1|A|C|1534
1K8A|1|A|G|1535
*
1K8A|1|A|C|1650
1K8A|1|A|C|1651
*
1K8A|1|A|G|1655
1K8A|1|A|A|1656
1K8A|1|A|A|1657
1K8A|1|A|A|1658
1K8A|1|A|A|1659
1K8A|1|A|G|1660

Current chains

Chain A

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L37Ae

Chain C

RIBOSOMAL PROTEIN L2