3D structure

PDB id
1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.01 Å

Loop

Sequence
UG*CUGCAAAG*CA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1KC8_011 not in the Motif Atlas
Geometric match to J3_4V9F_011
Geometric discrepancy: 0.0264
The information below is about J3_4V9F_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60031.2
Basepair signature
cWW-cWW-cWW-tWH-tSH-F-F
Number of instances in this motif group
7

Unit IDs

1KC8|1|A|U|27
1KC8|1|A|G|28
*
1KC8|1|A|C|480
1KC8|1|A|U|481
1KC8|1|A|G|482
1KC8|1|A|C|483
1KC8|1|A|A|484
1KC8|1|A|A|485
1KC8|1|A|A|486
1KC8|1|A|G|487
*
1KC8|1|A|C|515
1KC8|1|A|A|516

Current chains

Chain A
23S RRNA

Nearby chains

Chain 3
RIBOSOMAL PROTEIN L39E
Chain E
RIBOSOMAL PROTEIN L4
Chain S
RIBOSOMAL PROTEIN L22
Chain U
RIBOSOMAL PROTEIN L24

Coloring options:


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