J3_1KD1_002
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAUCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 1KD1|1|A|U|777, 1KD1|1|A|G|885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_002 not in the Motif Atlas
- Homologous match to J3_4V9F_002
- Geometric discrepancy: 0.0431
- The information below is about J3_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
1KD1|1|A|C|774
1KD1|1|A|G|775
1KD1|1|A|A|776
1KD1|1|A|U|777
1KD1|1|A|C|778
1KD1|1|A|U|779
1KD1|1|A|A|780
*
1KD1|1|A|U|866
1KD1|1|A|A|867
1KD1|1|A|G|868
*
1KD1|1|A|C|884
1KD1|1|A|G|885
1KD1|1|A|A|886
1KD1|1|A|G|887
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain C
- RIBOSOMAL PROTEIN L2
- Chain N
- RIBOSOMAL PROTEIN L15E
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