J3_1KD1_005

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1KD1|1|A|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1KD1_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0372

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1KD1|1|A|C|1404
1KD1|1|A|U|1405
1KD1|1|A|A|1406
1KD1|1|A|A|1407
1KD1|1|A|U|1408
1KD1|1|A|G|1409
*
1KD1|1|A|C|1700
1KD1|1|A|A|1701
1KD1|1|A|U|1702
1KD1|1|A|G|1703
*
1KD1|1|A|C|1715
1KD1|1|A|A|1716
1KD1|1|A|A|1717
1KD1|1|A|G|1718

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E