J3_1KQS_003
3D structure
- PDB id
- 1KQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAA*UGUUAG*CGUG
- Length
- 13 nucleotides
- Bulged bases
- 1KQS|1|0|U|825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KQS_003 not in the Motif Atlas
- Homologous match to J3_4V9F_003
- Geometric discrepancy: 0.0346
- The information below is about J3_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.1
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
1KQS|1|0|C|789
1KQS|1|0|A|790
1KQS|1|0|A|791
*
1KQS|1|0|U|823
1KQS|1|0|G|824
1KQS|1|0|U|825
1KQS|1|0|U|826
1KQS|1|0|A|827
1KQS|1|0|G|828
*
1KQS|1|0|C|853
1KQS|1|0|G|854
1KQS|1|0|U|855
1KQS|1|0|G|856
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain A
- RIBOSOMAL PROTEIN L2
- Chain O
- RIBOSOMAL PROTEIN L19E
- Chain Y
- RIBOSOMAL PROTEIN L37Ae
Coloring options: