J3_1M1K_005

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1M1K|1|A|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1M1K_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0334

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1M1K|1|A|C|1404
1M1K|1|A|U|1405
1M1K|1|A|A|1406
1M1K|1|A|A|1407
1M1K|1|A|U|1408
1M1K|1|A|G|1409
*
1M1K|1|A|C|1700
1M1K|1|A|A|1701
1M1K|1|A|U|1702
1M1K|1|A|G|1703
*
1M1K|1|A|C|1715
1M1K|1|A|A|1716
1M1K|1|A|A|1717
1M1K|1|A|G|1718

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E