J3_1M90_005
3D structure
- PDB id
- 1M90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAUG*CAUG*CAAG
- Length
- 14 nucleotides
- Bulged bases
- 1M90|1|A|U|1702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1M90_005 not in the Motif Atlas
- Homologous match to J3_4V9F_005
- Geometric discrepancy: 0.0319
- The information below is about J3_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32852.6
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
1M90|1|A|C|1404
1M90|1|A|U|1405
1M90|1|A|A|1406
1M90|1|A|A|1407
1M90|1|A|U|1408
1M90|1|A|G|1409
*
1M90|1|A|C|1700
1M90|1|A|A|1701
1M90|1|A|U|1702
1M90|1|A|G|1703
*
1M90|1|A|C|1715
1M90|1|A|A|1716
1M90|1|A|A|1717
1M90|1|A|G|1718
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain Q
- RIBOSOMAL PROTEIN L19E
Coloring options: