J3_1M90_014
3D structure
- PDB id
- 1M90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 1M90|1|A|U|68, 1M90|1|A|A|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1M90_014 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.0312
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
1M90|1|A|A|52
1M90|1|A|C|53
*
1M90|1|A|G|66
1M90|1|A|A|67
1M90|1|A|U|68
1M90|1|A|A|69
1M90|1|A|A|70
1M90|1|A|G|71
1M90|1|A|C|72
*
1M90|1|A|G|105
1M90|1|A|A|106
1M90|1|A|U|107
1M90|1|A|U|108
1M90|1|A|U|109
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain T
- RIBOSOMAL PROTEIN L23
- Chain W
- RIBOSOMAL PROTEIN L29
Coloring options: