3D structure

PDB id
1M90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UGACG*CC*GAAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1M90_017 not in the Motif Atlas
Homologous match to J3_4V9F_017
Geometric discrepancy: 0.0242
The information below is about J3_4V9F_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08594.1
Basepair signature
cWW-tSH-tHH-F-F-cWW-F-cWW
Number of instances in this motif group
6

Unit IDs

1M90|1|A|U|1531
1M90|1|A|G|1532
1M90|1|A|A|1533
1M90|1|A|C|1534
1M90|1|A|G|1535
*
1M90|1|A|C|1650
1M90|1|A|C|1651
*
1M90|1|A|G|1655
1M90|1|A|A|1656
1M90|1|A|A|1657
1M90|1|A|A|1658
1M90|1|A|A|1659
1M90|1|A|G|1660

Current chains

Chain A
23S RRNA

Nearby chains

Chain 1
RIBOSOMAL PROTEIN L37Ae
Chain C
RIBOSOMAL PROTEIN L2

Coloring options:


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