J3_1N32_004

3D structure

PDB id

1N32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

1N32|1|A|A|975, 1N32|1|A|G|976, 1N32|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1N32_004 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0532

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

1N32|1|A|U|955
1N32|1|A|U|956
1N32|1|A|U|957
1N32|1|A|A|958
1N32|1|A|A|959
1N32|1|A|U|960
1N32|1|A|U|961
1N32|1|A|C|962
*
1N32|1|A|G|973
1N32|1|A|A|974
1N32|1|A|A|975
1N32|1|A|G|976
1N32|1|A|A|977
1N32|1|A|A|978
1N32|1|A|C|979
1N32|1|A|C|980
1N32|1|A|U|981
1N32|1|A|U|982
1N32|1|A|A|983
1N32|1|A|C|984
*
1N32|1|A|G|1221
1N32|1|A|G|1222
1N32|1|A|C|1223
1N32|1|A|G|1224
1N32|1|A|A|1225

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain J

30S RIBOSOMAL PROTEIN S10

Chain M

30S RIBOSOMAL PROTEIN S13

Chain N

30S RIBOSOMAL PROTEIN S14

Chain S

30S RIBOSOMAL PROTEIN S19

Chain Y

ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA