J3_1N33_004
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 1N33|1|A|A|975, 1N33|1|A|G|976, 1N33|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1N33_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0735
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1N33|1|A|U|955
1N33|1|A|U|956
1N33|1|A|U|957
1N33|1|A|A|958
1N33|1|A|A|959
1N33|1|A|U|960
1N33|1|A|U|961
1N33|1|A|C|962
*
1N33|1|A|G|973
1N33|1|A|A|974
1N33|1|A|A|975
1N33|1|A|G|976
1N33|1|A|A|977
1N33|1|A|A|978
1N33|1|A|C|979
1N33|1|A|C|980
1N33|1|A|U|981
1N33|1|A|U|982
1N33|1|A|A|983
1N33|1|A|C|984
*
1N33|1|A|G|1221
1N33|1|A|G|1222
1N33|1|A|C|1223
1N33|1|A|G|1224
1N33|1|A|A|1225
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain N
- 30S RIBOSOMAL PROTEIN S14
- Chain S
- 30S RIBOSOMAL PROTEIN S19
Coloring options: