J3_1N33_016

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUAGGGAACCC*GGGGUGCCC*GGGAGCCCUAG

Length

31 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1N33|1|A|C|999
1N33|1|A|U|1000
1N33|1|A|A|1001
1N33|1|A|G|1002
1N33|1|A|G|1003
1N33|1|A|G|1003|||A
1N33|1|A|A|1004
1N33|1|A|A|1005
1N33|1|A|C|1006
1N33|1|A|C|1007
1N33|1|A|C|1008
*
1N33|1|A|G|1021
1N33|1|A|G|1022
1N33|1|A|G|1023
1N33|1|A|G|1024
1N33|1|A|U|1025
1N33|1|A|G|1026
1N33|1|A|C|1027
1N33|1|A|C|1028
1N33|1|A|C|1029
*
1N33|1|A|G|1032
1N33|1|A|G|1033
1N33|1|A|G|1034
1N33|1|A|A|1035
1N33|1|A|G|1036
1N33|1|A|C|1037
1N33|1|A|C|1038
1N33|1|A|C|1039
1N33|1|A|U|1040
1N33|1|A|A|1041
1N33|1|A|G|1042

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains