J3_1N34_021

3D structure

PDB id

1N34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GC*GGAAUCUUC*GAGC

Length

15 nucleotides

Bulged bases

1N34|1|A|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1N34|1|A|G|46
1N34|1|A|C|47
*
1N34|1|A|G|361
1N34|1|A|G|362
1N34|1|A|A|363
1N34|1|A|A|364
1N34|1|A|U|365
1N34|1|A|C|366
1N34|1|A|U|367
1N34|1|A|U|368
1N34|1|A|C|369
*
1N34|1|A|G|392
1N34|1|A|A|393
1N34|1|A|G|394
1N34|1|A|C|395

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12

Chain P

30S RIBOSOMAL PROTEIN S16