Loop J3_1N34

3D structure

PDB id: 1N34 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Experimental method: X-RAY DIFFRACTION
Resolution: 3.8 Å

Loop

Sequence: GCCUUGACAUG*CACAGGUGCUGCAU*AUGGCCCUUACGGC
Length: 39 nucleotides
Bulged bases: 1N34|1|A|U|1049, 1N34|1|A|C|1054, 1N34|1|A|C|1214
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1N34|1|A|G|988
1N34|1|A|C|989
1N34|1|A|C|990
1N34|1|A|U|991
1N34|1|A|U|992
1N34|1|A|G|993
1N34|1|A|A|994
1N34|1|A|C|995
1N34|1|A|A|996
1N34|1|A|U|997
1N34|1|A|G|998
*
1N34|1|A|C|1043
1N34|1|A|A|1044
1N34|1|A|C|1045
1N34|1|A|A|1046
1N34|1|A|G|1047
1N34|1|A|G|1048
1N34|1|A|U|1049
1N34|1|A|G|1050
1N34|1|A|C|1051
1N34|1|A|U|1052
1N34|1|A|G|1053
1N34|1|A|C|1054
1N34|1|A|A|1055
1N34|1|A|U|1056
*
1N34|1|A|A|1204
1N34|1|A|U|1205
1N34|1|A|G|1206
1N34|1|A|G|1207
1N34|1|A|C|1208
1N34|1|A|C|1209
1N34|1|A|C|1210
1N34|1|A|U|1211
1N34|1|A|U|1212
1N34|1|A|A|1213
1N34|1|A|C|1214
1N34|1|A|G|1215
1N34|1|A|G|1216
1N34|1|A|C|1217

Current chains

Chain A: 16S RIBOSOMAL RNA

Nearby chains

Chain C: 30S RIBOSOMAL PROTEIN S3
Chain J: 30S RIBOSOMAL PROTEIN S10
Chain N: 30S RIBOSOMAL PROTEIN S14
Chain S: 30S RIBOSOMAL PROTEIN S19
Chain Z: A-SITE MESSENGER RNA FRAGMENT

J3_1N34_024