J3_1N8R_004

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGA*UCUAAGAAAA*UUAC

Length

17 nucleotides

Bulged bases

1N8R|1|A|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1N8R|1|A|G|1159
1N8R|1|A|G|1160
1N8R|1|A|A|1161
*
1N8R|1|A|U|1185
1N8R|1|A|C|1186
1N8R|1|A|U|1187
1N8R|1|A|A|1188
1N8R|1|A|A|1189
1N8R|1|A|G|1190
1N8R|1|A|A|1191
1N8R|1|A|A|1192
1N8R|1|A|A|1193
1N8R|1|A|A|1194
*
1N8R|1|A|U|1205
1N8R|1|A|U|1206
1N8R|1|A|A|1207
1N8R|1|A|C|1208

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

Acidic ribosomal protein P0 homolog