J3_1N8R_011
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UG*CUGCAAAG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1N8R_011 not in the Motif Atlas
- Geometric match to J3_4V9F_011
- Geometric discrepancy: 0.0371
- The information below is about J3_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
1N8R|1|A|U|27
1N8R|1|A|G|28
*
1N8R|1|A|C|480
1N8R|1|A|U|481
1N8R|1|A|G|482
1N8R|1|A|C|483
1N8R|1|A|A|484
1N8R|1|A|A|485
1N8R|1|A|A|486
1N8R|1|A|G|487
*
1N8R|1|A|C|515
1N8R|1|A|A|516
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L39e
- Chain E
- 50S ribosomal protein L4E
- Chain S
- 50S ribosomal protein L22P
- Chain U
- 50S ribosomal protein L24P
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