J3_1NJM_001

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAGCUA*UAGGA*UAACCGAA

Length

20 nucleotides

Bulged bases

1NJM|1|0|G|699, 1NJM|1|0|G|789, 1NJM|1|0|A|802, 1NJM|1|0|C|803, 1NJM|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|U|696
1NJM|1|0|G|697
1NJM|1|0|A|698
1NJM|1|0|G|699
1NJM|1|0|C|700
1NJM|1|0|U|701
1NJM|1|0|A|702
*
1NJM|1|0|U|786
1NJM|1|0|A|787
1NJM|1|0|G|788
1NJM|1|0|G|789
1NJM|1|0|A|790
*
1NJM|1|0|U|800
1NJM|1|0|A|801
1NJM|1|0|A|802
1NJM|1|0|C|803
1NJM|1|0|C|804
1NJM|1|0|G|805
1NJM|1|0|A|806
1NJM|1|0|A|807

Current chains

Chain 0

23S ribosomal RNA

Nearby chains