J3_1NJM_007

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUCAA*UGUAGAGC*GUAGAAG

Length

20 nucleotides

Bulged bases

1NJM|1|0|U|2275, 1NJM|1|0|U|2298, 1NJM|1|0|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|C|2274
1NJM|1|0|U|2275
1NJM|1|0|C|2276
1NJM|1|0|A|2277
1NJM|1|0|A|2278
*
1NJM|1|0|U|2296
1NJM|1|0|G|2297
1NJM|1|0|U|2298
1NJM|1|0|A|2299
1NJM|1|0|G|2300
1NJM|1|0|A|2301
1NJM|1|0|G|2302
1NJM|1|0|C|2303
*
1NJM|1|0|G|2310
1NJM|1|0|U|2311
1NJM|1|0|A|2312
1NJM|1|0|G|2313
1NJM|1|0|A|2314
1NJM|1|0|A|2315
1NJM|1|0|G|2316

Current chains

Chain 0

23S ribosomal RNA

Nearby chains