J3_1NJM_013

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

1NJM|1|0|U|460, 1NJM|1|0|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJM_013 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.3034

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

1NJM|1|0|C|32
1NJM|1|0|C|33
1NJM|1|0|U|34
1NJM|1|0|G|35
*
1NJM|1|0|C|457
1NJM|1|0|G|458
1NJM|1|0|A|459
1NJM|1|0|U|460
1NJM|1|0|A|461
1NJM|1|0|G|462
1NJM|1|0|C|463
1NJM|1|0|G|464
1NJM|1|0|C|465
1NJM|1|0|A|466
1NJM|1|0|U|467
1NJM|1|0|A|468
1NJM|1|0|G|469
1NJM|1|0|U|470
1NJM|1|0|A|471
1NJM|1|0|C|472
*
1NJM|1|0|G|479
1NJM|1|0|G|480
1NJM|1|0|A|481
1NJM|1|0|A|482
1NJM|1|0|A|483
1NJM|1|0|G|484

Current chains

Chain 0

23S ribosomal RNA

Nearby chains