J3_1NJM_015

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UCGGGAC*GACAGC*GCA

Length

16 nucleotides

Bulged bases

1NJM|1|0|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|U|1357
1NJM|1|0|C|1358
1NJM|1|0|G|1359
1NJM|1|0|G|1360
1NJM|1|0|G|1361
1NJM|1|0|A|1362
1NJM|1|0|C|1363
*
1NJM|1|0|G|1394
1NJM|1|0|A|1395
1NJM|1|0|C|1396
1NJM|1|0|A|1397
1NJM|1|0|G|1398
1NJM|1|0|C|1399
*
1NJM|1|0|G|1414
1NJM|1|0|C|1415
1NJM|1|0|A|1416

Current chains

Chain 0

23S ribosomal RNA

Nearby chains