J3_1NJM_017

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

1NJM|1|0|G|514, 1NJM|1|0|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJM_017 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.3737

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

1NJM|1|0|G|30
1NJM|1|0|C|31
*
1NJM|1|0|G|485
1NJM|1|0|U|486
1NJM|1|0|G|487
1NJM|1|0|A|488
1NJM|1|0|A|489
1NJM|1|0|A|490
1NJM|1|0|A|491
1NJM|1|0|G|492
1NJM|1|0|A|493
1NJM|1|0|A|494
1NJM|1|0|C|495
*
1NJM|1|0|G|506
1NJM|1|0|A|507
1NJM|1|0|G|508
1NJM|1|0|U|509
1NJM|1|0|G|510
1NJM|1|0|A|511
1NJM|1|0|A|512
1NJM|1|0|A|513
1NJM|1|0|G|514
1NJM|1|0|A|515
1NJM|1|0|G|516
1NJM|1|0|A|517
1NJM|1|0|A|518
1NJM|1|0|C|519
1NJM|1|0|C|520

Current chains

Chain 0

23S ribosomal RNA

Nearby chains