J3_1NJN_001

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAGCUA*UAGGA*UAACCGAA

Length

20 nucleotides

Bulged bases

1NJN|1|0|G|699, 1NJN|1|0|G|789, 1NJN|1|0|A|802, 1NJN|1|0|C|803, 1NJN|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|U|696
1NJN|1|0|G|697
1NJN|1|0|A|698
1NJN|1|0|G|699
1NJN|1|0|C|700
1NJN|1|0|U|701
1NJN|1|0|A|702
*
1NJN|1|0|U|786
1NJN|1|0|A|787
1NJN|1|0|G|788
1NJN|1|0|G|789
1NJN|1|0|A|790
*
1NJN|1|0|U|800
1NJN|1|0|A|801
1NJN|1|0|A|802
1NJN|1|0|C|803
1NJN|1|0|C|804
1NJN|1|0|G|805
1NJN|1|0|A|806
1NJN|1|0|A|807

Current chains

Chain 0

23S ribosomal RNA

Nearby chains