J3_1NJN_014

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGA*UUCAAAGAGUGC*GCUCAC

Length

21 nucleotides

Bulged bases

1NJN|1|0|G|1067, 1NJN|1|0|G|1098, 1NJN|1|0|A|1099, 1NJN|1|0|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|G|1066
1NJN|1|0|G|1067
1NJN|1|0|A|1068
*
1NJN|1|0|U|1092
1NJN|1|0|U|1093
1NJN|1|0|C|1094
1NJN|1|0|A|1095
1NJN|1|0|A|1096
1NJN|1|0|A|1097
1NJN|1|0|G|1098
1NJN|1|0|A|1099
1NJN|1|0|G|1100
1NJN|1|0|U|1101
1NJN|1|0|G|1102
1NJN|1|0|C|1103
*
1NJN|1|0|G|1110
1NJN|1|0|C|1111
1NJN|1|0|U|1112
1NJN|1|0|C|1113
1NJN|1|0|A|1114
1NJN|1|0|C|1115

Current chains

Chain 0

23S ribosomal RNA

Nearby chains