J3_1NJN_016

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUC*GAGC*GUAGAAG

Length

14 nucleotides

Bulged bases

1NJN|1|0|U|2275, 1NJN|1|0|G|2313, 1NJN|1|0|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|C|2274
1NJN|1|0|U|2275
1NJN|1|0|C|2276
*
1NJN|1|0|G|2300
1NJN|1|0|A|2301
1NJN|1|0|G|2302
1NJN|1|0|C|2303
*
1NJN|1|0|G|2310
1NJN|1|0|U|2311
1NJN|1|0|A|2312
1NJN|1|0|G|2313
1NJN|1|0|A|2314
1NJN|1|0|A|2315
1NJN|1|0|G|2316

Current chains

Chain 0

23S ribosomal RNA

Nearby chains