J3_1NJN_017

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

1NJN|1|0|G|514, 1NJN|1|0|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJN_017 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.3748

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

1NJN|1|0|G|30
1NJN|1|0|C|31
*
1NJN|1|0|G|485
1NJN|1|0|U|486
1NJN|1|0|G|487
1NJN|1|0|A|488
1NJN|1|0|A|489
1NJN|1|0|A|490
1NJN|1|0|A|491
1NJN|1|0|G|492
1NJN|1|0|A|493
1NJN|1|0|A|494
1NJN|1|0|C|495
*
1NJN|1|0|G|506
1NJN|1|0|A|507
1NJN|1|0|G|508
1NJN|1|0|U|509
1NJN|1|0|G|510
1NJN|1|0|A|511
1NJN|1|0|A|512
1NJN|1|0|A|513
1NJN|1|0|G|514
1NJN|1|0|A|515
1NJN|1|0|G|516
1NJN|1|0|A|517
1NJN|1|0|A|518
1NJN|1|0|C|519
1NJN|1|0|C|520

Current chains

Chain 0

23S ribosomal RNA

Nearby chains