J3_1NJO_001

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAGCUA*UAGGA*UAACCGAA

Length

20 nucleotides

Bulged bases

1NJO|1|0|G|699, 1NJO|1|0|G|789, 1NJO|1|0|A|802, 1NJO|1|0|C|803, 1NJO|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|U|696
1NJO|1|0|G|697
1NJO|1|0|A|698
1NJO|1|0|G|699
1NJO|1|0|C|700
1NJO|1|0|U|701
1NJO|1|0|A|702
*
1NJO|1|0|U|786
1NJO|1|0|A|787
1NJO|1|0|G|788
1NJO|1|0|G|789
1NJO|1|0|A|790
*
1NJO|1|0|U|800
1NJO|1|0|A|801
1NJO|1|0|A|802
1NJO|1|0|C|803
1NJO|1|0|C|804
1NJO|1|0|G|805
1NJO|1|0|A|806
1NJO|1|0|A|807

Current chains

Chain 0

23S ribosomal RNA

Nearby chains