J3_1NJO_013

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

1NJO|1|0|U|460, 1NJO|1|0|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJO_013 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.3034

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

1NJO|1|0|C|32
1NJO|1|0|C|33
1NJO|1|0|U|34
1NJO|1|0|G|35
*
1NJO|1|0|C|457
1NJO|1|0|G|458
1NJO|1|0|A|459
1NJO|1|0|U|460
1NJO|1|0|A|461
1NJO|1|0|G|462
1NJO|1|0|C|463
1NJO|1|0|G|464
1NJO|1|0|C|465
1NJO|1|0|A|466
1NJO|1|0|U|467
1NJO|1|0|A|468
1NJO|1|0|G|469
1NJO|1|0|U|470
1NJO|1|0|A|471
1NJO|1|0|C|472
*
1NJO|1|0|G|479
1NJO|1|0|G|480
1NJO|1|0|A|481
1NJO|1|0|A|482
1NJO|1|0|A|483
1NJO|1|0|G|484

Current chains

Chain 0

23S ribosomal RNA

Nearby chains